One search across human & microbial metabolism
The VMH integrates hundreds of manually-curated genome-scale metabolic models with nutrition, disease and gut-microbiome data — and the tools to simulate them.
Explore the database
Eight interconnected resources — every metabolite, gene and disease is cross-linked and traceable to its source.
Human
Recon3D & Harvey/Harvetta whole-body reconstructions
Microbes
AGORA & APOLLO gut-microbe reconstructions
Microbiome
Community samples & strain abundances
Diseases
255 Mendelian inborn errors of metabolism
Nutrition
8,790 foods + in-silico diet designer
Recon Maps
Interactive Escher metabolic maps
Health conditions
Condition-linked metabolic signatures
Exposures
Food, drug & environmental annotations
Analyse, build & predict
Purpose-built tools that used to be buried in the menu — grouped by what you’re trying to do.
Modeling & reconstruction
Build, compare and download metabolic models.
Microbiome analysis
Mine secretion, flux and cross-feeding across strains.
Data upload & metabolomics
Bring your own data into the VMH context.
Prediction quality
Inspect, validate and explore predictions.
Whole-body models
Sex-specific, organ-resolved models of human metabolism — Harvey & Harvetta — now with a live, interactive hub and an infant growth explorer.
Inborn errors of metabolism, decision support
Evaluate IMD cases against curated metabolic signatures, browse documented cases, and contribute your own.
Programmatic access & integrations
Query everything over a documented REST API and SPARQL endpoint, fully compatible with the COBRA Toolbox.