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Frequently asked questions
How do I cite the use of this website?
Is VMH a clinical or medical tool?
How do I navigate the resources?
How do I download search results?
How do I download a whole reconstruction or model?
Is there an API or SPARQL endpoint for programmatic access?
How often is VMH updated?
How do I report an error or suggest a correction?
Can I use VMH data commercially? (terms of use)
What is the difference between Recon3D and Recon4D, and which should I use?
Where can I find the most recent version of Recon 3D?
What are AGORA2 and APOLLO?
What are Harvey, Harvetta, and the whole-body models (WBM)?
What are subsystems?
What do the compartment codes ([c], [e], [m], …) mean?
What do the reaction confidence scores mean?
A metabolite or reaction abbreviation changed — how do I find the current one?
Why do metabolites have different formulas when compared with other databases?
Why do reactions have different co-factors when compared with other databases?
Why do some metabolite names have numbers on them, e.g. lysinium(+1)?
Why doesn't a metabolite have a structure, and how do I get its SMILES/InChI?
Where do the thermodynamic (ΔG) values come from?
What is the atom mapping shown on reaction pages?
How do I use the “Gut microbiota content search”?
How reliable are the microbial metabolic predictions?
How are diseases linked to genes and reactions, and what are biomarkers?
What is the meaning of abbreviations such as SAB and MM in the notes section of some reactions?
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