Page index
Every page in the VMH, grouped and searchable, with the access right each one requires.
PublicSign-inCuratorAdminPublic + gated writeDev / internal
155 of 155 pages
Home & general8
Landing, about, citation, update log
Browse — catalogues11
Top-level listings of each database
PublicAll databases/searchResults?searchTerm=
PublicHuman reconstructions/allHumans
PublicMicrobes/allMicrobesAGORA2 + APOLLO
PublicMicrobiomes/allMicrobiomes
PublicDiseases/allDiseases
PublicGenes/allGenes
PublicMetabolites/allMetabolites
PublicReactions/allReactions
PublicReactions (legacy list)/reactions
Dev / internalHuman — alt build/allHumansUmera
Dev / internalDiseases — alt build/allDiseasesUmera
Entity detail pages18
Dynamic per-record pages
PublicMetabolite/metabolite/[id]
PublicReaction/reaction/[id]
PublicGene/gene/[id]
PublicMicrobe/microbe/[id]
PublicMicrobiome/microbiome/[id]
PublicMicrobiome study/microbiome/study/[id]
PublicMicrobiome cohort/microbiome/cohort
PublicMicrobiome scenarios/microbiome/scenarios
PublicDisease/disease/[id]
PublicDrug/drug/[id]
PublicFood/food/[id]
PublicDiet/diet/[id]
PublicNutrition item/nutrition/[id]
PublicOrgan/organ/[id]
PublicHPO term/hpo/[id]
PublicSubsystem/subsystem/[name]
PublicMetabolite structure/structure/[metAbbr]
PublicReaction structure/structure/rxn/[rxnAbbr]
Search & query13
Specialised search and selection tools
PublicAdvanced search/advancedSearch
PublicSearch dashboard/searchDashboard
PublicCapability search/capabilitySearch
PublicChemical structure search/chemStructureSearch
PublicStructure search/structureSearch
PublicMicrobe condition search/microbeConditionSearch
PublicMicrobe flux search/microbeFluxSearch
PublicMicrobe multi-filter/microbeMultiFilter
CuratorSearch insights/searchInsightsCurator analytics
PublicMetabolite super-producers/metaboliteSuperProducers
PublicKey metabolites/keyMetabolites
PublicSelected items / cart/selectedItems
PublicBulk ID submission/BulkIDSubmissionPage
Maps3
Metabolic map viewers
Nutrition4
Food, composition, diet design
Predictions & microbiome analysis8
Microbe / microbiome prediction explorers
PublicPrediction explorer/predictionExplorer
PublicPredicted explorer (legacy)/predictedExplorer
PublicTaxonomy prediction explorer/taxonomyPredictionExplorer
PublicPrediction QC dashboard/predictionQc
PublicInvestigate prediction/investigatePrediction
PublicCompare reconstructions/compareReconstructions
PublicGene overlap (human reconstructions)/geneOverlap5-set Venn of connected genes
PublicGene–disease associations not modelled/geneDiseaseCoverageCuration worklist; linked from /curation
Cross-domain explorers5
Pages that connect data across domains (drugs, genes, microbiome, food, disease, the WBM)
PublicAdverse event ↔ metabolism/adverseEventMetabolismSide effect → drugs → shared target genes/subsystems
PublicDrug interaction mechanism/drugInteractionMechanismMetabolizing enzymes & targets two drugs share (mechanism view, not a checker)
PublicGene expression vs the WBM/geneExpressionWbmGTEx tissue expression vs WBM reaction presence
PublicMicrobiome × disease biomarkers/microbiomeBiomarkersGut microbes that metabolize/modulate an IMD biomarker
PublicFood ↔ metabolic pathways/foodPathwayFood composition → metabolites → pathways + LanguaL
Conditions & exposures3
Health-condition and exposure annotations
PublicHealth conditions/conditions
PublicCondition axis page/condition/[axis]/[value]
PublicExposure annotations/exposures
Simulation (FBA)6
Flux-balance simulation workflow
WBM / live-entity (/e)36
Whole-body-model & live-entity framework — edge-gated (ADR-065)
Sign-inLive-model hub/eSigned-in (+ WBM role if configured)
PublicLive entity list/e/[type]/indexRead-only, not gated
PublicLive entity page/e/[type]/[id]Read-only, not gated
Sign-inQuery the whole-body models/e/wbmQueryEdge-gated tool
PublicBiomarker analysis/e/biomarkerAnalysisRead-only
PublicGrowth trajectory/e/growthRead-only
PublicWBM growth since 1.0/e/wbmGrowthRead-only
PublicWBM coverage of the IMDs/e/wbmImdCoverageRead-only
PublicDrug catalogue analytics/e/drugStatsRead-only
PublicDrug targets (Sankey)/e/drugTargetsRead-only
PublicDrug metabolomics coverage/e/drugCoverageRead-only
PublicDrug derivative coverage/e/drugDerivativesRead-only
Dev / internalWBM drug comparison (→ WBM growth)/e/wbmDrugComparisonLegacy URL; redirects to /e/wbmGrowth
PublicWBM ↔ microbiome drug metabolism/e/wbmDrugMicrobiomeRead-only
PublicIMD pathway coverage/e/imdCoverageRead-only
PublicOrphan drugs & the WBM/e/orphanDrugsRead-only
Sign-inVariant systems viewer/e/variantsEdge-gated tool
Sign-inBiomarker upload/e/biomarkerUploadEdge-gated tool
Sign-inWBM simulation/e/simulationEdge-gated tool
CuratorMasterfile upload/e/masterfileUploadEdge-gated + role
CuratorGPR curation/e/gprCurationEdge-gated + role
CuratorSubsystem curation/e/subsystemCurationEdge-gated + role
CuratorMissing mol files/e/missingMolFilesEdge-gated + role
CuratorReaction balance/e/reactionBalanceEdge-gated + role
CuratorRecon row conflicts/e/reconConflictsEdge-gated + role
CuratorMetabolite rename conflicts/e/metRenameConflictsRole-guarded
CuratorMetabolite export/e/metaboliteExportRole-guarded
CuratorWBM GPR curation (organ-level)/e/wbmGprCurationRole-guarded
CuratorWBM GPR vs .mat check/e/wbmGprMatCheckRole-guarded
CuratorWBM GPR token QC/e/wbmGprQcRole-guarded
CuratorWBM mislabeled reactions/e/wbmMislabeledRole-guarded
CuratorWBM stoichiometry drift/e/wbmStoichDriftRole-guarded
CuratorWBM duplicate reactions/e/wbmDuplicateReactionsRole-guarded
PublicRequest WBM access/wbmAccess
PublicMetabolites by physiology/wbmMetabolites
PublicDownload whole-body models/wbmModels
Clinicians & IMD9
Clinician portal and IMD case tools
PublicClinician overview/clinicians
PublicClinician signup/ClinicianSignup
PublicIMD instructions/ClinicianIMDInstructions
PublicMutation extractor/clinicians/mutationExtractor
Sign-inIMD diagnosis / eval/ClinicianIMDEval
Sign-inIMD stats/ClinicianIMDStats
Sign-inIMD cases/IMDcases
Sign-inCase form/caseForm
AdminIMD editor/IMDeditorMSPGadmin
Toolbox, downloads & editors8
Tools, model/reconstruction downloads, editors
PublicToolbox overview/toolbox
PublicPersephone/persephone
Public + gated writeDownload reconstructions/reconstructionDownloadSome downloads role-gated
PublicMetabolomics upload/metabolomicsUpload
Public + gated writeMolecule editor/molEditorSave needs MSPGadmin/MSPGedit
PublicBuild model/buildModel
AdminSubmission editor/editorMSPGadmin
AdminEdit resource/editResourceMSPGadmin
Curation & admin8
Curation hub and operational monitoring
CuratorCuration hub/curationMSPGadmin / curator
CuratorCuration overview (docs)/curationOverviewCurator/editor
CuratorFormula check/molFormulaCheckMSPGadmin / curator
CuratorInChI check/molInchiCheckMSPGadmin / curator
CuratorStereochemistry check/stereoCheckMSPGadmin / curator
CuratorStereo pathway check/stereoPathwayCheckMSPGadmin / curator
AdminDatabase monitoring/databaseMonitoringMSPGadmin
PublicRegression monitor/regressionMonitorNo server guard — review
Guided entry1
Question-first routing into the rest of the app
Authentication4
Account and session pages
Help & docs4
API, SPARQL, feedback
Dev / test / internal6
Not part of the public navigation
Uncategorised (auto-detected)3
Pages found in pages/ at build time that aren't in a group above. They appear here automatically — file each into a GROUP in sitemap.tsx with its access tier.