Page index
Every page in the VMH, grouped and searchable, with the access right each one requires.
PublicSign-inCuratorAdminPublic + gated writeDev / internal
118 of 118 pages
Home & general6
Landing, about, citation, update log
Browse — catalogues11
Top-level listings of each database
PublicAll databases/searchResults?searchTerm=
PublicHuman reconstructions/allHumans
PublicMicrobes/allMicrobesAGORA2 + APOLLO
PublicMicrobiomes/allMicrobiomes
PublicDiseases/allDiseases
PublicGenes/allGenes
PublicMetabolites/allMetabolites
PublicReactions/allReactions
PublicReactions (legacy list)/reactions
Dev / internalHuman — alt build/allHumansUmera
Dev / internalDiseases — alt build/allDiseasesUmera
Entity detail pages18
Dynamic per-record pages
PublicMetabolite/metabolite/[id]
PublicReaction/reaction/[id]
PublicGene/gene/[id]
PublicMicrobe/microbe/[id]
PublicMicrobiome/microbiome/[id]
PublicMicrobiome study/microbiome/study/[id]
PublicMicrobiome cohort/microbiome/cohort
PublicMicrobiome scenarios/microbiome/scenarios
PublicDisease/disease/[id]
PublicDrug/drug/[id]
PublicFood/food/[id]
PublicDiet/diet/[id]
PublicNutrition item/nutrition/[id]
PublicOrgan/organ/[id]
PublicHPO term/hpo/[id]
PublicSubsystem/subsystem/[name]
PublicMetabolite structure/structure/[metAbbr]
PublicReaction structure/structure/rxn/[rxnAbbr]
Search & query12
Specialised search and selection tools
PublicAdvanced search/advancedSearch
PublicSearch dashboard/searchDashboard
PublicCapability search/capabilitySearch
PublicChemical structure search/chemStructureSearch
PublicStructure search/structureSearch
PublicMicrobe condition search/microbeConditionSearch
PublicMicrobe flux search/microbeFluxSearch
PublicMicrobe multi-filter/microbeMultiFilter
PublicMetabolite super-producers/metaboliteSuperProducers
PublicKey metabolites/keyMetabolites
PublicSelected items / cart/selectedItems
PublicBulk ID submission/BulkIDSubmissionPage
Maps3
Metabolic map viewers
Nutrition4
Food, composition, diet design
Predictions & microbiome analysis6
Microbe / microbiome prediction explorers
PublicPrediction explorer/predictionExplorer
PublicPredicted explorer (legacy)/predictedExplorer
PublicTaxonomy prediction explorer/taxonomyPredictionExplorer
PublicPrediction QC dashboard/predictionQc
PublicInvestigate prediction/investigatePrediction
PublicCompare reconstructions/compareReconstructions
Conditions & exposures3
Health-condition and exposure annotations
PublicHealth conditions/conditions
PublicCondition axis page/condition/[axis]/[value]
PublicExposure annotations/exposures
Simulation (FBA)6
Flux-balance simulation workflow
WBM / live-entity (/e)16
Whole-body-model & live-entity framework — edge-gated (ADR-065)
Sign-inLive-model hub/eSigned-in (+ WBM role if configured)
PublicLive entity list/e/[type]/indexRead-only, not gated
PublicLive entity page/e/[type]/[id]Read-only, not gated
PublicBiomarker analysis/e/biomarkerAnalysisRead-only
PublicGrowth trajectory/e/growthRead-only
Sign-inVariant systems viewer/e/variantsEdge-gated tool
Sign-inBiomarker upload/e/biomarkerUploadEdge-gated tool
Sign-inWBM simulation/e/simulationEdge-gated tool
CuratorMasterfile upload/e/masterfileUploadEdge-gated + role
CuratorGPR curation/e/gprCurationEdge-gated + role
CuratorSubsystem curation/e/subsystemCurationEdge-gated + role
CuratorMissing mol files/e/missingMolFilesEdge-gated + role
CuratorReaction balance/e/reactionBalanceEdge-gated + role
PublicRequest WBM access/wbmAccess
PublicMetabolites by physiology/wbmMetabolites
PublicDownload whole-body models/wbmModels
Clinicians & IMD9
Clinician portal and IMD case tools
PublicClinician overview/clinicians
PublicClinician signup/ClinicianSignup
PublicIMD instructions/ClinicianIMDInstructions
PublicMutation extractor/clinicians/mutationExtractor
Sign-inIMD diagnosis / eval/ClinicianIMDEval
Sign-inIMD stats/ClinicianIMDStats
Sign-inIMD cases/IMDcases
Sign-inCase form/caseForm
AdminIMD editor/IMDeditorMSPGadmin
Toolbox, downloads & editors8
Tools, model/reconstruction downloads, editors
PublicToolbox overview/toolbox
PublicPersephone/persephone
Public + gated writeDownload reconstructions/reconstructionDownloadSome downloads role-gated
PublicMetabolomics upload/metabolomicsUpload
Public + gated writeMolecule editor/molEditorSave needs MSPGadmin/MSPGedit
PublicBuild model/buildModel
AdminSubmission editor/editorMSPGadmin
AdminEdit resource/editResourceMSPGadmin
Curation & admin3
Curation hub and operational monitoring
Authentication4
Account and session pages
Help & docs3
API, SPARQL, feedback
Dev / test / internal6
Not part of the public navigation