Microbe / Microbiome Prediction Explorer
One place for the microbe and microbiome prediction tools. Everything here is built on genome-scale reconstructions and community models — predicted, population-level associations, not measurements and not a medical device.
Microbe & strain prediction
Search and compare individual reconstructions (APOLLO / AGORA2) by what they are predicted — and known — to do.
Got a counter-intuitive prediction? Assemble all the cross-VMH evidence (cross-source, mechanism, experimental, taxonomy) into one verdict.
OpenMulti-condition search crossing predicted flux and curated experimental evidence, combined with AND / OR.
OpenRank microbes predicted to secrete or take up a chosen metabolite (FBA flux), by source and phylum.
OpenFind reconstructions that secrete all of one set of metabolites and take up all of another.
OpenFind microbes associated with a given reaction or metabolite.
OpenSide-by-side comparison of the predicted capabilities of selected reconstructions.
OpenExplore predicted features across taxonomy — sunburst slicing, brushable scatters, size-correlations.
OpenMetabolite & community prediction
Move from single strains to metabolites and whole gut-microbiome communities.